EVOLVE STAGE 2 CRATES ARCHIVE
EVOLVE STAGE 2 CRATES SOFTWARE

While these platforms are useful, experience has shown that it is important to put greater emphasis on the interconnection of the multiple artefacts that make up the research process.

EVOLVE STAGE 2 CRATES SOFTWARE

Important examples include data publication with rich metadata (e.g.В Zenodo ), domain-specific data deposition (e.g.В PDB ) and following practices for reproducible research software (e.g.В use of containers). Hence, there has been an increasing amount of work in the development of platforms and specifications that aim to fulfil these goals. These principles are agnostic to the implementation strategy needed to comply with them. It is often argued that the publication of these assets, and specifically software, workflows and data, should follow the FAIR principles namely, that they are Findable, Accessible, Interoperable and Reusable. This is particularly apparent in domains that rely on computational experiments for example, the publication of software, datasets and records of the dependencies that such experiments rely on. The move towards Open Science has increased the need and demand for the publication of artefacts of the research process. By applying вЂњjust enoughвЂќ Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also enhancing research reproducibility.ДЄn RO-Crate for this article is archived at 1 Introduction As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences.

EVOLVE STAGE 2 CRATES ARCHIVE

RO-Crate is based on annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations.ДЄn RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. Funded by BioExcel-2 (European Commission H2020-INFRAEDI-2018-1 823830) EOSC-Life (European Commission H2020-INFRAEOSC-2018-2 824087) IBISBA (European Commission H2020-INFRAIA-2017-1-two-stage 730976, H2020-INFRADEV-2019-2 871118) SyntheSys+ (European Commission H2020-INFRAIA-2018-1 823827)ДЄn increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications.Informatics Institute, Faculty of Science, University of Amsterdam, NLДepartment of Computer Science, The University of Manchester, UK Sloan Foundation (grant number P-2020-13988). Vlaams Instituut voor de Zee}, Oostende, BE Funded by EOSC-Life (European Commission H2020-INFRAEOSC-2018-2 824087).Funded by EOSC-Life (European Commission H2020-INFRAEOSC-2018-2 824087) DataPLANT ( NFDI 7/1 вЂ“ 42077441), part of the German National Research Data Infrastructure (NFDI), funded by the Deutsche Forschungsgemeinschaft (DFG).Д¬enter for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula (CA), Italy.Ontology Engineering Group, Universidad PolitГ©cnica de Madrid, Madrid, ESД«ioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, DE VIB-UGent Center for Plant Systems Biology, Gent, BEД«arcelona Supercomputing Center, Barcelona, ES ZB MED Information Centre for Life Sciences, Cologne, DE Funded by Harvard Data Commons is supported by an award from Harvard University Information Technology (HUIT).Institute for Quantitative Social Science, Harvard University, Cambridge, MA, US Funded by BioExcel-2 (European Commission H2020-INFRAEDI-2018-1 823830) IBISBA (H2020-INFRAIA-2017-1-two-stage 730976)ДЇaculty of Science, University Technology Sydney, AU.This manuscript has been accepted by the journal Data Science for review.ДЄ DOI-citable preprint is available at and arXiv:2108.06503Дepartment of Computer Science, The University of Manchester, UK Informatics Institute, Faculty of Science, University of Amsterdam, NL Packaging research artefacts with RO-Crate Packaging research artefacts with RO-Crate

Evolve stage 2 crates